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Fig. 4 | Microbiome

Fig. 4

From: The gastrointestinal microbiome in dairy cattle is constrained by the deterministic driver of the region and the modified effect of diet

Fig. 4

Detection and trait of polysaccharide utilization loci (PULs) across Prevotella sp. UBA3846, Vibrio cholerae RC9, and Alistipes members. Maximum-likelihood phylogenetic tree of 47 high-quality strain-level genome bins (SGBs) recovered. Lines connecting the tree to the genome name are colored by taxonomic family assignment. Circles represent nodes with bootstrap support greater than 70 (out of 100 bootstraps). Heatmaps showing a comparison of genomes in abundance across the four-chambered stomach (FS), small intestine (SI), and large intestine (LI), and a Z-score was used for correcting abundance. The black boxes indicate that at least one gene within the specific substrate-degrading PUL was detected. Histograms colored in gray indicated the number of PULs encoded from genomes. F, forage-based diet; G, grain-based diet

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Microbiome

ISSN: 2049-2618

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