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Table 1 Alpha diversity metrics showing species richness and evenness. Statistically significant P-values are shown in bold (P < 0.05), including the differences with P < 0.1. (HtHt: The cows which remained healthy throughout the study, HtIn: The cows which were healthy at initial sampling, then developed BDD, InIn: The cows which had BDD at all inspection points, InHt: The cows which had BDD at initial sampling then recovered, BL_HtHt: The cows which had healthy BL feet during the study, BL_HtIn: The cows which were healthy at sampling, then developed BDD on their BL feet, BL_InIn: The cows which had BDD in their BL feet at all sampling points, BL_InHt: The cows which had BDD in their BL feet at initial sampling, then recovered. P-value: P value of t-test, SE: standard error, N_P_value: P-value of nonparametric Wilcoxon rank sum tests)

From: The bovine foot skin microbiota is associated with host genotype and the development of infectious digital dermatitis lesions

 

n

Chao1

SE

P-value

N_P-value

Shannon

SE

P-value

N_P-value

Simpson

SE

P-value

N_P-value

HtHt

112

13412.22

181.74

0.5575

0.8406

10.61

0.06

0.0903

0.8319

0.05

0.002

0.1899

0.2888

HtIn

48

13217.19

277.61

10.41

0.1

0.04

0.003

HtHt

112

13412.22

218.41

0.0165

0.0839

10.61

0.08

0.0002

0.0048

0.05

0.002

0.0494

0.0595

InIn

59

12511.4

300.93

10.12

0.11

0.04

0.003

HtHt

112

13412.2

190.76

0.6445

0.7079

10.61

0.06

0.0166

0.21

0.05

0.002

0.0647

0.0452

InHt

16

13162.6

504.69

10.2

0.16

0.04

0.005

InIn

59

12511.4

404.08

0.459

0.3257

10.12

0.15

0.8114

0.7661

0.04

0.003

0.5691

0.4532

InHt

16

13162.6

775.94

10.2

0.29

0.04

0.005

BL_HtHt

148

13532.40

173.38

0.0167

0.1053

10.60

0.06

0.0116

0.2616

0.05

0.002

0.5797

0.6584

BL_HtIn

41

12633.60

329.41

10.27

0.11

0.04

0.003

BL_HtHt

148

13532.40

179.65

0.0052

0.0369

10.60

0.06

0.0001

0.0002

0.05

0.002

0.0107

0.0152

BL_InIn

37

12396.40

359.29

10.07

0.12

0.04

0.003

BL_HtHt

148

13532.40

166.97

0.0125

0.1450

10.60

0.06

0.0001

0.0056

0.05

0.002

0.0014

0.0014

BL_InHt

9

11769.90

677.08

9.52

0.22

0.02

0.007

BL_InIn

37

12396.40

506.10

0.5868

0.8139

10.07

0.19

0.2159

0.2505

0.04

0.003

0.0513

0.0509

BL_InHt

9

11769.90

1026.20

9.52

0.39

0.02

0.006