Skip to main content

Table 1 Overview of the multi-omics study data

From: Alterations of oral microbiota and impact on the gut microbiome in type 1 diabetes mellitus revealed by integrated multi-omic analyses

 

Total samples

MG samples

MG sequencing data [Gbp]

MG read recruitment [%]

MT samples

MT sequencing data [Gbp]

MT read recruitment [%]

MP samples

MP

MS2 scans [k]

MP protein groups [k]

Stool

84

84

4.2 ± 0.8

95.3 ± 2.5

64

5.6 ± 1.1

56.8 ± 9.8

71

94.7 ± 59.4

4.5 ± 3.5

Oral

76

74

4.2 ± 0.9

83.5 ± 12.1

74

7.0 ± 1.6

62.7 ± 16.7

  1. Number of samples used in total and per ome, average values of sequencing and mass spectrometry (MS) raw data and key metrics from saliva and stool samples. The number of samples per ome and location pertains to the number of available biomolecule samples available from the individuals. Sequencing data acquired are shown in Giga base pairs (Gbp) and percentage of recruitment of sequencing reads to assemblies, fragment ion spectra acquired (MS2 scans), and protein groups identified. All values are shown with standard deviation
  2. MG metagenomics, MT metatranscriptomics, MP metaproteomics, k kilo, Gbp Giga base pairs