Fig. 2

Maximum-likelihood phylogenomic reconstruction of deep-sea hydrothermal vent archaeal metagenome-assembled genomes generated in GTDB-Tk. The tree was generated with 122 archaeal marker genes. Taxa are shown at the phylum level, except for the Thermoproteota, Asgardarchaeota, Halobacteriota, and Methanobacteriota, shown at the class level. The number of MAGs in each highlighted taxon is shown in parentheses. See Table S2 for details. Quality is shown on the inner ring (green: high quality, purple: medium quality, with one manually curated Nanoarchaeota MAG below the 50% completion threshold also displayed as medium quality), while the outer ring displays normalized read coverage up to 200x. SH-like support values ≥ 80% are indicated with filled circles, and the scale bar represents 0.1 amino acid substitutions per site. The tree was artificially rooted with the Iainarchaeota, Micrarchaeota, SpSt-1190, Undinarchaeota, Nanohaloarchaeota, EX4484-52, Aenigmarchaeota, Aenigmarchaeota_A, and Nanoarchaeota using iTOL. The tree used to create this figure is available in Newick format (Data S5), and the formatted tree is publicly available on iTOL at https://itol.embl.de/shared/alrlab