Fig. 6

Bacterial isolations from the resistant tomato rhizosphere. A Phylogenetic tree constructed using the full-length 16S rRNA gene sequences of 259 cultured bacteria. The numbers at the tip of the tree are the isolation number. The taxonomic classification at the order level is shown by the corresponding color of the legend. The size of circle is proportional to the bootstrap value. The branches were unscaled. B Comparison between culturable bacteria and amplicon result. The innermost layer denotes the top 5% bacterial genera in relative abundance in the amplicon results. The branch color represents the phylum-level classification. The triangles in the second layer indicate the successfully isolated genera. The third layer heatmap represents the abundance of the corresponding genus in the amplicon results. The color from light to dark represents the abundance from low to high. The outermost layer represents the percentage of this genus in all culturable genera