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Fig. 4 | Microbiome

Fig. 4

From: Human microbiota drives hospital-associated antimicrobial resistance dissemination in the urban environment and mirrors patient case rates

Fig. 4

Genome-level analysis reveals transmission between hospital and urban environments. A Phylogenetic tree based on the concatenation of 120 conserved prokaryotic marker genes including 383 high- and medium-quality MAGs recovered from the urban environment and 15 high-resolution K. pneumoniae genomes sequenced from hospital-associated infections (ST-11 outbreak). Tree branches are colored according to taxonomy (phylum level). B Zoom-in the monophyletic clade corresponding to family Enterobacteriaceae. Tips are colored according to species and branches are grouped according to sample origin (ST-11 outbreak or environment). K. pneumoniae MAG recovered from sample CPB-17 (bin.7) is highlighted to show its phylogenetic association with K. pneumoniae nosocomial isolates recovered from the outbreak. C Boxplot showing the number of SNPs separating CBP-17_bin.7 from outbreak-associated K. pneumoniae ST-11 genomes or a global collection of non-outbreak K. pneumoniae ST-11 genomes

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Microbiome

ISSN: 2049-2618

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