Table 1 S. oryzae genes differentially expressed in TCT-challenged bacteriomes (p-adj < 0.05) identified by dual RNA-seq
Gene information | Average expression (TPM)b | Log2 fold change | ||||||
|---|---|---|---|---|---|---|---|---|
Gene ID | Type | Gene abbreviation | Protein name | Naïve | PBS | TCT | TCT vs naïve | TCT vs PBS |
LOC115882681 | Unknown | N/A | Uncharacterized | 2.93 | 1.06 | 0.03 | − 6.941 | − 5.574 |
LOC115888453 | Transcription factor | adf-1 | Transcription factor Adf-1 family | 54.55 | 49.23 | 34.33 | − 0.696 | − 0.601 |
LOC115881033 | Translation initiation | eif4ebp-2 | Eukaryotic translation initiation factor 4E-binding protein 2 | 256.09 | 249.36 | 162.63 | − 0.691 | − 0.706 |
LOC115891903 | Transcription factor | nrbp | Nuclear receptor-binding protein | 117.12 | 128.47 | 83.03 | − 0.518 | − 0.600 |
LOC115883362 | Transcription factor | znf-91 | Zinc finger protein 91-like | 48.09 | 46.24 | 36.16 | − 0.436 | − 0.434 |
LOC115877563 | ABC transporter | mrp-4 | Multidrug resistance-associated protein 4-like | 1.41 | 1.30 | 3.44 | 1.277 | 1.335 |
LOC115885681 | Growth factor | brx | Barietin toxin | 1.24 | 1.13 | 4.30 | 1.793 | 1.881 |
LOC115886735 | Bacterial recognition | gnbp-1 | Beta-1,3-glucan-binding protein-like | 7.07 | 8.72 | 37.97 | 2.411 | 2.052 |
LOC115874620 | AMP | col-A | Coleoptericin-A | 251.44 | 480.30 | 2116.35 | 3.030 | 2.040 |
LOC115883884 | AMP | lux | Luxuriosin | 7.34 | 6.01 | 60.94 | 3.042 | 3.256 |
LOC115884866 | AMP | glyr-amp | Glycine-rich AMP | 11.10 | 12.88 | 120.87 | 3.410 | 3.165 |
LOC115888387 | AMP | srx | Sarcotoxin | 27.81 | 28.61 | 407.20 | 3.826 | 3.734a |
LOC115877462 | AMP | dpt-2 | Diptericin-2 | 40.45 | 63.50 | 731.07 | 4.131 | 3.425 |
LOC115877463 | AMP | dpt-3 | Diptericin-3 | 9.45 | 13.71 | 261.58 | 4.759 | 4.164 |
LOC115874703 | AMP | col-B | Coleoptericin-B | 1.97 | 3.42 | 86.46 | 5.386 | 4.538 |
LOC115877465 | AMP | dpt-4 | Diptericin-4 | 1.31 | 2.52 | 98.43 | 6.196 | 5.225 |