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Table 3 Summary of metatranscriptomics data generated from samples obtained from the jejunum and ceca

From: Systematic profiling of the chicken gut microbiome reveals dietary supplementation with antibiotics alters expression of multiple microbial pathways with minimal impact on community structure

  

GI site

  

Jejunum

Ceca

Samples

36

37

Read distribution (Average per sample)

Total reads

35,656,008

35,024,959

Adaptor/low quality

882,679

1,220,289

Dereplicated reads

6,819,170

14,545,294

Host

28,831,231

8,329,729

Diet associated

2,186,540

303,640

rRNA

716,066

1,567,325

Putative mRNA

3,039,403

23,603,976

Reads mapped to known transcript

1,771,348

13,254,020

Unique transcripts

49,354

184,279

Unique enzymes

1,034

1,140