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Table 4 Distribution of gene encoding for metabolism of pentose phosphate pathway in the metagenome of the eight spontaneous sourdoughs. The expressed genes, evaluated through meta-tascriptomic analyses, were marked by bouble asterisk

From: Metabolic framework of spontaneous and synthetic sourdough metacommunities to reveal microbial players responsible for resilience and performance

 

Genes

Dominant

Sub-dominant

Fru. sanfranciscensis

Lac. plantarum

Lim. fermentum

Leuc. citreum

Wei. confusa

Sac. cerevisiae

Pic. kudriavzevii

Lev. brevis

Fur. rossiae

Lat. curvatus

CORE GENES

3-hexulose-6-phosphate synthase [EC:4.1.2.43]

*

*

   

**

 

*

  

6-phosphofructokinase 1 [EC:2.7.1.11]

 

*

   

**

    

6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]

**

**

**

**

*

**

**

*

**

*

6-phosphogluconolactonase [EC:3.1.1.31]

**

**

 

**

 

**

**

**

 

*

fructose-bisphosphate aldolase, class II [EC:4.1.2.13]

*

**

  

*

**

**

*

 

*

gluconokinase [EC:2.7.1.12]

**

**

**

*

**

**

 

*

*

*

glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]

**

**

**

**

*

**

 

*

*

 

glucose-6-phosphate isomerase [EC:5.3.1.9]

**

*

**

**

 

**

**

 

*

 

phosphoglucomutase [EC:5.4.2.2]

**

**

**

*

*

**

**

**

  

phosphopentomutase [EC:5.4.2.7]

**

 

**

    

**

*

 

ribokinase [EC:2.7.1.15]

**

**

**

**

*

**

**

 

*

 

ribose 5-phosphate isomerase A [EC:5.3.1.6]

**

**

**

**

**

*

**

**

*

 

ribose-phosphate pyrophosphokinase [EC:2.7.6.1]

**

**

**

**

**

**

**

*

**

 

ribulose-phosphate 3-epimerase [EC:5.1.3.1]

**

*

**

**

 

*

**

*

**

 

transaldolase [EC:2.2.1.2]

 

**

**

  

*

**

**

*

 

transketolase [EC:2.2.1.1]

*

**

**

**

 

**

**

*

*

 

xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22]

**

**

**

*

*

   

*

 

ACCESSORY GENES

4-hexulose-6-phosphate synthase [EC:4.1.2.43]

        

*

 

6-phospho-3-hexuloisomerase [EC:5.3.1.27]

       

*

  

10-phosphogluconolactonase [EC:3.1.1.31]

        

*

 

11-phosphogluconolactonase [EC:3.1.1.31]

    

*

     

2-dehydro-3-deoxy-phosphogluconate aldolase [EC:4.1.2.14]

 

**

        

2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]

 

**

 

**

   

*

  

2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]

 

*

     

*

  

7-phosphogluconolactonase [EC:3.1.1.31]

  

**

       

8-phosphogluconolactonase [EC:3.1.1.31]

        

**

 

9-phosphogluconolactonase [EC:3.1.1.31]

  

*

       

deoxyribose-phosphate aldolase [EC:4.1.2.4]

  

**

    

*

 

*

fructose-1,6-bisphosphatase I [EC:3.1.3.11]

      

**

   

fructose-1,6-bisphosphatase III [EC:3.1.3.11]

 

**

       

*

glucose 1-dehydrogenase [EC:1.1.1.47]

 

*

*

**

*

    

**

 

Genes

Sub-dominant

Satellites

Lac. paracasei

Lac. rhamnosus

Fru. lindneri

Leu.mesenteroides

Leu.pseudomesenteroides

Ped. pentosaceus

Ped. parvulus

Lac.lactis

Ent. faecium

Erw. persicina

CORE GENES

3-hexulose-6-phosphate synthase [EC:4.1.2.43]

     

**

    

6-phosphofructokinase 1 [EC:2.7.1.11]

     

*

    

6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]

   

*

 

**

 

*

*

 

6-phosphogluconolactonase [EC:3.1.1.31]

   

*

 

**

*

   

fructose-bisphosphate aldolase, class II [EC:4.1.2.13]

 

*

   

*

    

gluconokinase [EC:2.7.1.12]

*

*

   

**

*

   

glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]

*

    

**

    

glucose-6-phosphate isomerase [EC:5.3.1.9]

     

*

    

phosphoglucomutase [EC:5.4.2.2]

   

*

 

**

*

   

phosphopentomutase [EC:5.4.2.7]

*

         

ribokinase [EC:2.7.1.15]

*

  

*

*

*

   

*

ribose 5-phosphate isomerase A [EC:5.3.1.6]

   

*

 

**

 

*

  

ribose-phosphate pyrophosphokinase [EC:2.7.6.1]

     

**

    

ribulose-phosphate 3-epimerase [EC:5.1.3.1]

     

**

    

transaldolase [EC:2.2.1.2]

          

transketolase [EC:2.2.1.1]

 

*

        

xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22]

*

  

*

 

*

  

*

 

ACCESSORY GENES

4-hexulose-6-phosphate synthase [EC:4.1.2.43]

          

6-phospho-3-hexuloisomerase [EC:5.3.1.27]

  

*

  

**

    

10-phosphogluconolactonase [EC:3.1.1.31]

          

11-phosphogluconolactonase [EC:3.1.1.31]

          

2-dehydro-3-deoxy-phosphogluconate aldolase [EC:4.1.2.14]

          

2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]

 

**

 

*

 

**

    

2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]

 

*

        

7-phosphogluconolactonase [EC:3.1.1.31]

          

8-phosphogluconolactonase [EC:3.1.1.31]

          

9-phosphogluconolactonase [EC:3.1.1.31]

          

deoxyribose-phosphate aldolase [EC:4.1.2.4]

 

**

     

*

  

fructose-1,6-bisphosphatase I [EC:3.1.3.11]

          

fructose-1,6-bisphosphatase III [EC:3.1.3.11]

*

    

**

    

glucose 1-dehydrogenase [EC:1.1.1.47]

     

*

*

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