Campylobacter 17 species, 495 core genes, 445 NR, 50 CR | Clostridium 65 species, 120 core genes, 108 NR, 12 CR | Legionella 47 species, 392 core genes, 348 NR, 44, CR | Staphylococcus 36 species, 604 core genes, 556 NR, 48 CR | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Locus | PHI | SBP | HGT | PHI | SBP | HGT | PHI | SBP | HGT | PHI | SBP | HGT |
rpoA | X | X | X | X | X | X | X | X | X | X | X | ✓ |
rpoB | ✓ | ✓ | X | ✓ | X | X | X | X | X | X | X | X |
rpoB* | X | X | X | X | X | X | X | X | ||||
rpoC | ✓ | X | X | X | X | ✓ | X | X | X | ✓ | X | X |
NR (%) | 0.38 | 0.15 | 0.32 | 0.11 | 0.03 | 0.41 | 0.01 | 0.02 | 0.08 | 0.09 | 0.07 | 0.22 |
CR (%) | 0.12 | 0.08 | 0.16 | 0.08 | 0.00 | 0.08 | 0.05 | 0.02 | 0.23 | 0.02 | 0.00 | 0.79 |
16S | ✓ | ✓ | X | ✓ | X | ✓ | ✓ | ✓ | X | X | X | ✓ |
23S | X | X | X | X | X | ✓ | X | ✓ | X | X | X | ✓ |
5S | X | ✓ | X | ✓ | X | X | X | ✓ | ||||
16S M | ✓ | ✓ | X | X | ✓ | ✓ | X | X | ||||
V1-2 | ✓ | X | X | X | X | X | X | |||||
V3 | X | X | X | X | ||||||||
V3 M | X | X | X | X | X | |||||||
V3-V4 | X | X | X | X | X | X | X | X | ||||
V3-V4 M | X | X | X | X | X | X | ||||||
V4 | X | X | X | X | X | X | X | |||||
V4 M | X | X | X | X | X | |||||||
V5 | X | X | X | X | ||||||||
V6 | X | X | X | X | ||||||||
V7 | X | X | X | X | ||||||||
V8 | X | X | X | X | ||||||||
V9 | X | X | NP | NP | NP | X |