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Fig. 5 | Microbiome

Fig. 5

From: Virome in the cloaca of wild and breeding birds revealed a diversity of significant viruses

Fig. 5

Phylogenies of retroviruses and caliciviruses identified in the cloaca of birds. A Bayesian inference tree established based on amino acid sequences of env of retroviruses. B Bayesian inference tree established based on amino acid sequences of pol of retroviruses. C Bayesian inference tree established based on amino acid sequences of gag of retroviruses. DThe top graph shows the genome organization of the new retrovirus identified in black swan (Cygnus atratus), the middle graph shows the coverage of sequence reads in library mapping against the genome of this retrovirus, and the bottom graph shows the sequence reads in library mapping against a representative genomic fragment of black swan. E Bayesian inference tree established based on amino acid sequences of RdRp of caliciviruses. Putative cross-species infection of calicivirus between wild birds and domestic poultries are shown. Putative new genus name is labeled beside the corresponding clade. F Bayesian inference tree established based on amino acid sequences of the capsid of caliciviruses. Within trees, the viruses found in this study are marked with a red line. Species names of birds are indicated. Each scale bar indicates the amino acid substitutions per site

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