Skip to main content
Fig. 3 | Microbiome

Fig. 3

From: MetaPop: a pipeline for macro- and microdiversity analyses and visualization of microbial and viral metagenome-derived populations

Fig. 3

MetaPop’s codon-level SNP linkages increase the number of positively selected detected genes using pN/pS. (AC, top) Pie charts displaying the predicted genes belonging to a contig which passed preprocessing coverage and depth cutoffs, genes with at least one SNP observed, and genes with at least one codon with putatively linked SNPs, and a pop-out pie chart showing the breakdown of genes with observed SNPs and those containing a codon with putatively linked SNPs. (AC, bottom) Barplots comparing the percent of genes under selection when calculated after linking SNPs vs. not attempting to link SNPs. Data is shown for the autism biological virome dataset using A PHRED20 and B PHRED30 global SNP calls and on the Global Oceans’ biological virome dataset using C PHRED30 global SNP calls

Back to article page