Fig. 1From: MetaPop: a pipeline for macro- and microdiversity analyses and visualization of microbial and viral metagenome-derived populationsMetaPop pipeline overview. MetaPop requires three primary inputs (a genome fasta file, file with the number of reads or bps per library, and unsorted BAM files). The BAM files are sorted and indexed and preprocessed (here showing the default setting for dsDNA viruses). The output of preprocessing goes through the macrodiversity or microdiversity arms of the pipelines. Codon usage bias is calculated as well and can be calculated independent of the whole MetaPop pipelineBack to article page