Fig. 1

Temporal response of ileal and fecal microbiome to dietary fiber deprivation after adaptation to standard corn-soybean meal diet. A Boxplots of alpha diversity as measured by Observed Species and Shannon diversity index of the ileal and fecal microbiome. B PCoA of the ileal and fecal microbiome over time based on weighted the unifrac distance metrics. C Relative abundance of bacteria at phylum and genus level. The top 10 most abundant phylum and top 20 most abundant genera are shown. D Differential abundant ASVs over time. Statistical analyses were performed using Kruskal-Wallis test with P value adjustment using FDR correction. Significance between community structure was evaluated by PERMANOVA. ^*P < 0.05