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Table 1 Jaccard index of edges. The BBMO network before applying EnDED contained 29820 edges of which 2488 (8.3%) were environmentally driven (indirect). Considering the Jaccard index for these indirect edges, 688 (27.7% of indirect edges) score above 50%, and 1800 (72.3%) score below or equal to 50%. In contrast, 61.1% of edges not considered as indirect have a Jaccard index above 50%, and 38.9% of all not indirect edges have a Jaccard index equal or below 50%

From: Disentangling environmental effects in microbial association networks

 

All

Jaccard index > 50

Jaccard index ≤ 50

BBMO network

29 820 (100%)

17 383 (58.3%)

12 437 (41.7%)

Positive edges

24 458 (82.0%)

17 212 (70.4%)

7 246 (29.6%)

Negative edges

5 362 (18.0%)

171 (3.2%)

5 191 (96.8%)

Indirect (intersection)

2 488 (8.3%)

688 (27.7%)

1 800 (72.3%)

Positive + indirect (intersection)

934 (3.1%)

670 (71.7%)

264 (28.3%)

Negative + indirect (intersection)

1 554 (5.2%)

18 (1.2%)

1 536 (98.8%)

Not indirect (all)

27 332 (91.7%)

16 695 (61.1%)

10 637 (38.9%)

Not indirect (min 1 triplet)

22 742 (76.3%)

14 242 (62.6%)

8 500 (37.4%)

Not indirect (no triplet)

4 590 (15.4%)

2 453 (53.4%)

2 137 (46.6%)

Sign pattern

25 230 (84.6%)

14 930 (59.2%)

10 300 (40.8%)

Overlap

25 230 (84.6%)

14 930 (59.2%)

10 300 (40.8%)

Interaction information

7 672 (25.7%)

4 962 (64.7%)

2 710 (35.3%)

Data processing inequality

7 394 (24.8%)

1 862 (25.2%)

5 532 (74.8%)