From: Increasing the power of interpretation for soil metaproteomics data
Databases | Tools used/database origin | Computational timea (hours) | Size of the database (in residues) | Number of protein entries |
---|---|---|---|---|
MGH-6RF | MEGAHIT + six-frames translation | 13 | 1,028,880,437 | 21,883,653 |
MGH-FGS | MEGAHIT + FragGeneScan | 13 | 168,662,946 | 1,269,322 |
PLASS | PLASS | 6 | 1,784,677,737 | 16,004,028 |
FGS | FragGeneScan | 43b | 2,939,955,188 | 72,130,656 |
sixgill | Sixgill | 5.5 | 82,314,892 | 2,577,349 |
NCBI | Non-redundant NCBI | - | 41,817,980,956 | 108,307,546 |
SGC | Soil gene catalog | - | 21,962,323,955 | 159,657,012 |