Skip to main content

Table 1 Sample-specific metagenomic databases and generic databases

From: Increasing the power of interpretation for soil metaproteomics data

Databases Tools used/database origin Computational timea (hours) Size of the database (in residues) Number of protein entries
MGH-6RF MEGAHIT + six-frames translation 13 1,028,880,437 21,883,653
MGH-FGS MEGAHIT + FragGeneScan 13 168,662,946 1,269,322
PLASS PLASS 6 1,784,677,737 16,004,028
FGS FragGeneScan 43b 2,939,955,188 72,130,656
sixgill Sixgill 5.5 82,314,892 2,577,349
NCBI Non-redundant NCBI - 41,817,980,956 108,307,546
SGC Soil gene catalog - 21,962,323,955 159,657,012
  1. aComputer used: 10 CPU, 240 Gb RAM memory
  2. bSingle thread