Sample size = 531 | ||||||||
---|---|---|---|---|---|---|---|---|
Count | Rarefaction | TSS | CSS | |||||
α-level | 0.05 | 0.01 | 0.05 | 0.01 | 0.05 | 0.01 | 0.05 | 0.01 |
FPR | ||||||||
Corncob | 0.0522 | 0.0115 | 0.0523 | 0.0115 | - | - | - | - |
DESeq2 | 0.0954 | 0.0305 | 0.0951 | 0.0304 | - | - | - | - |
EdgeR | 0.0588 | 0.0130 | 0.0580 | 0.0133 | - | - | - | - |
LDM | 0.0494 | 0.0097 | 0.0493 | 0.0098 | 0.0494 | 0.0097 | 0.0499 | 0.0097 |
Limma | 0.0493 | 0.0098 | 0.0493 | 0.0101 | - | - | - | - |
Linear regression | 0.0475 | 0.0085 | 0.0475 | 0.0085 | 0.0475 | 0.0085 | 0.0496 | 0.0101 |
MetagenomeSeq | - | - | - | - | - | - | 0.1354 | 0.0552 |
Monocle | 0.9463 | 0.9296 | 0.9452 | 0.9283 | 0.0481 | 0.0087 | 0.0501 | 0.0102 |
QRank | 0.0489 | 0.0098 | 0.0496 | 0.0096 | 0.0489 | 0.0097 | 0.0491 | 0.0096 |
ZINQ-MinP | 0.0468 | 0.0092 | 0.0468 | 0.0091 | 0.0466 | 0.0090 | 0.0478 | 0.0092 |
ZINQ-Cauchy | 0.0522 | 0.0108 | 0.0523 | 0.0106 | 0.0524 | 0.0107 | 0.0523 | 0.0108 |
TPR | ||||||||
Corncob | 0.3009 | 0.1678 | 0.3000 | 0.1675 | - | - | - | - |
DESeq2 | 0.2210 ∗ | 0.1095 ∗ | 0.2207 ∗ | 0.1093 ∗ | - | - | - | - |
EdgeR | 0.1603 | 0.0642 ∗ | 0.1610 | 0.0652 ∗ | - | - | - | - |
LDM | 0.1554 | 0.0646 | 0.1553 | 0.0646 | 0.1554 | 0.0646 | 0.2775 | 0.1530 |
Limma | 0.2923 | 0.1647 | 0.2918 | 0.1646 | - | - | - | - |
Linear regression | 0.1529 | 0.0611 | 0.1528 | 0.0611 | 0.1528 | 0.0610 | 0.2888 | 0.1619 |
MetagenomeSeq | - | - | - | - | - | - | 0.3165 ∗ | 0.1955 ∗ |
Monocle | 0.9610 ∗ | 0.9485 ∗ | 0.9603 ∗ | 0.9476 ∗ | 0.1537 | 0.0616 | 0.2901 | 0.1630 |
QRank | 0.2318 | 0.1156 | 0.2316 | 0.1152 | 0.2325 | 0.1162 | 0.2253 | 0.1088 |
ZINQ-MinP | 0.2419 | 0.1244 | 0.2414 | 0.1236 | 0.2422 | 0.1242 | 0.2391 | 0.1194 |
ZINQ-Cauchy | 0.2820 | 0.1511 | 0.2814 | 0.1506 | 0.2819 | 0.1514 | 0.2785 | 0.1449 |