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Fig. 3 | Microbiome

Fig. 3

From: Dynamics of dark fermentation microbial communities in the light of lactate and butyrate production

Fig. 3

Heatmap showing the relative abundance of genera in the individual Experiments for all timepoints and annotation with measured metabolites and pH. The heatmap was generated in R (Heatplus package, annHeatmap2 function) using the relative abundance of the observed genera. For clarity, the “Inoculum” sample and all genera with summarized relative abundance lower than 0.1% were removed. Rows were clustered using average linkage hierarchical clustering based on the Bray–Curtis dissimilarity matrix of the dataset (“vegdist” from the vegan package)

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