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Table 1 Overview of Candida strain genomes used in this study

From: Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics, and proteomics

Genome Genus Species Length # Scaffolds N50 BUSCO comp. Year sampled Sample type Reference
C1_006 Candida Parapsilosis 11852211 191 108686 92 2017 Infant fecal metagenome This study
N3_182 Candida Parapsilosis 12563647 342 65710 94 2013 Infant fecal metagenome Olm et al. 2019 [18, 21]
S2_005 Candida Parapsilosis 11573959 1051 14507 93 2014 NICU metagenome Olm et al. 2019 [18, 21]
NYC Subway Candida Parapsilosis 7420453 1285 6417 62 NA NYC subway metagenome This study
L2_023 Candida Parapsilosis 4870205 2906 1700 35 2017 Infant fecal metagenome This study
CDC317 Candida Parapsilosis 13030174 9 2091826 93 NA Clinical skin isolate Butler et al. 2009 [22]
GA1 Candida Parapsilosis 13025060 39 1114083 93 NA Clinical human blood isolate Pryszcz et al. 2013 [23]
CBS1984 Candida Parapsilosis 13044404 25 962200 92 NA Olive fruit isolate Pryszcz et al. 2013 [23]
CBS6318 Candida Parapsilosis 13050515 28 1691491 93 NA Healthy skin isolate Pryszcz et al. 2013 [23]
N1_023 Candida Albicans 13456346 1675 15180 94 2012 Infant fecal metagenome This study
N2_070 Candida Albicans 13540857 1614 14761 93 2012 Infant fecal metagenome This study
N5_264 Candida Albicans 11647081 746 27434 85 2015 Infant fecal metagenome This study
S3_003 Candida Albicans 11972257 1049 14710 87 2017 Infant mouth metagenome This study
S3_016 Candida Albicans 10068784 802 19749 86 2018 Infant mouth, skin, and gut metagenome coassembly This study
SP_CRL Candida Albicans 12561678 897 22840 91 NA Infant fecal metagenome Olm et al. 2019 [18, 21]