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Table 7 Resource usage of the three methods. Peak RAM of the assembly step (metaSPAdes for Recycler and SCAPP, metaplasmidSPAdes for mpSpades) in GB. Runtime (wall clock time, in minutes) is reported for the entire pipeline including assembly and any pre-processing and post-processing required. Human metagenome results are an average across the 20 samples

From: SCAPP: an algorithm for improved plasmid assembly in metagenomes

  

Runtime (minutes)

Dataset

RAM (GB)

Recycler

mpSpades

SCAPP

Human metagenomes

21

115

103

130

Plasmidome

30

907

548

909

Parallel metagenome

148

2118

2132

2230

Parallel plasmidome

26

881

684

884