From: SCAPP: an algorithm for improved plasmid assembly in metagenomes
Test | Ranking |
---|---|
Simulations (7) | SCAPP > Recycler > mpSpades |
Human gut metagenomes (20) | SCAPP ≫ mpSpades > Recycler |
Plasmidome | SCAPP > Recycler ≫ mpSpades |
Parallel: within tool | mpSpades > SCAPP ≫ Recycler |
Parallel: “overall”, across tools | SCAPP > Recycler > mpSpades |
Parallel: precision | SCAPP ≈ mpSpades ≫ Recycler |
P arallel: recall | Recycler > mpSpades ≈ SCAPP |