Table 5 Number of plasmids assembled by each tool and their median lengths (in kbp) for the parallel metagenome and plasmidome samples
From: SCAPP: an algorithm for improved plasmid assembly in metagenomes
metagenome | plasmidome | |||
|---|---|---|---|---|
Tool | # plasmids | median length | # plasmids | median length |
Recycler | 60 | 4.3 | 147 | 1.7 |
SCAPP | 25 | 5.8 | 110 | 1.8 |
mpSpades | 26 | 6.2 | 65 | 2.0 |