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Table 5 Number of plasmids assembled by each tool and their median lengths (in kbp) for the parallel metagenome and plasmidome samples

From: SCAPP: an algorithm for improved plasmid assembly in metagenomes

  metagenome plasmidome
Tool # plasmids median length # plasmids median length
Recycler 60 4.3 147 1.7
SCAPP 25 5.8 110 1.8
mpSpades 26 6.2 65 2.0