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Fig. 3 | Microbiome

Fig. 3

From: Characterization of the public transit air microbiome and resistome reveals geographical specificity

Fig. 3

Strain-level geographical specificity in public transit air microbiome for bacteria C. acnes and M. luteus based on phylogenetic and phylogenomic analyses. a Percentages of non-polymorphic sites present within strains of C. acnes and M. luteus within metagenomes. b and c StrainPhlAn phylogenetic clustering of b C. acnes and c M. luteus. d and e Principal coordinates analysis plot of PanPhlAn phylogenomic gene content analysis of geography-based clustering based on Jaccard distances between strains within metagenomes. d C. acnes and e M. luteus genomes from different natural and built environments were included in the plot. f and g Geography-level KO biomarkers ranked by mean decrease in accuracy, with each KO colour coded by gene functional family (f), and the prevalence of the KO biomarkers in each city (light green and purple bars represent markers of C. acnes and M. luteus, respectively) (g)

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