Fig. 3From: An atlas of the tissue and blood metagenome in cancer reveals novel links between bacteria, viruses and cancerPatient clusters defined by detected taxa can be identified across all patients and in cancer-type subgroups. a t-SNE visualization of all tumor tissue samples color coded by project using the log2-transformed RPPB of all detected non-phage taxa as input variables. b–h t-SNE visualizations of single cancer subgroup tumor tissues (b bone cancer, c chronic lymphocytic leukemia, d esophageal cancer, e liver cancer, f pancreatic adenocarcinoma, g prostate adenocarcinoma, h renal cancer). Different colors indicate the k-means clusters of samples to indicate if k-means clustering and t-SNE visualization results in comparable sample groupings (Supplementary Figure 4). Log2-transformed RPPB of all detected non-phage taxa were used as input variables for t-SNE visualization. Dimension 1 and dimension 2 is shown on the x- and y-axis, respectively. Cluster 4*, Pseudomonas sp., Serratia sp., and Salmonella enterica; Cluster 2**, Pseudomonas sp., Serratia sp., Salmonella enterica, Parvibaculum lavamentivorans, and Human Herpesvirus 5; Cluster 5***, Thauera sp. MZ1T, Cupriavidus metallidurans, and Pseudomonas mendocinaBack to article page