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Table 4 MS/MS supported proteins in the most expressed species in human gut microbiome

From: Using high-abundance proteins as guides for fast and effective peptide/protein identification from human gut metaproteomic data

Sample Most abundant # putative #proteins (≥1 spectrum) #proteins (≥3 spectra)
  species proteins all(%)/with-annotation(%) all(%)/with-annotation(%)
HM403 B. xylanisolvens 5442 757 (13.9%)/536 (9.8%) 437 (8.0%)/330 (6.0%)
HM415 B. fragilis 5121 751 (14.7%)/534 (10.4%) 403 (7.9%)/313 (6.1%)
HM454 B. vulgatus 4415 740 (16.7%)/540 (12.2%) 428 (9.7%)/346 (7.8%)
HM455 B. vulgatus 4806 1,085 (22.6%)/744 (15.4%) 668 (13.9%)/ 501 (10.4%)
HM466 B. vulgatus 4415 784 (17.7%)/583 (13.2%) 424 (9.6%)/344 (7.81%)
HM467 B. vulgatus 4464 924 (20.6%)/659 (14.7%) 543 (12.1%)/426(8.8%)
HM494 Clostridium_M 3061 750 (24.5%)/556 (18.1%) 438 (14.3%)/338 (11.0%)
HM503 B. ovatus 4931 1,077 (21.8%)/737 (14.9%) 578 (11.7%)/438 (8.8%)