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Table 3 Results in analysis of the Alzheimer’s disease (AD) data

From: Constraining PERMANOVA and LDM to within-set comparisons by projection improves the efficiency of analyses of matched sets of microbiome data

 

p-value for testing the

Number of OTUs

 

community-level hypothesis

detected at FDR 10%

 

permanovaFL

LDM

DESeq2

LDM

Without adjustment of APOE

0.0001

0.0001

168

66

With adjustment of APOE

0.0069

0.0159

66

0