From: animalcules: interactive microbiome analytics and visualization in R
 | Biobakery | Vegan | Mothur | Microbiome | Metavizr | Microbiome helper | Qiime2 | Phyloseq | animalcules |
---|---|---|---|---|---|---|---|---|---|
Filtering and data summary | ✔ |  | ✔ | ✔ |  | ✔ | ✔ | ✔ | ✔ |
Interactive visualization |  |  |  |  | ✔ |  | ✔ |  | ✔ |
Dimension reduction |  |  | ✔ | ✔ | ✔ | ✔ | ✔ | ✔ | ✔ |
Differential abundance analysis | ✔ |  | ✔ | ✔ | ✔ | ✔ | ✔ | ✔ | ✔ |
Diversity analysis |  | ✔ | ✔ | ✔ | ✔ | ✔ | ✔ | ✔ | ✔ |
Support for 16S rRNA data | ✔ | ✔ | ✔ | ✔ | ✔ | ✔ | ✔ | ✔ | ✔ |
Support for total RNA-seq data | ✔ | ✔ |  |  |  |  |  |  | ✔ |
Biomarker identification |  |  |  |  |  |  | ✔ |  | ✔ |
Interface and command-line |  |  |  |  |  | ✔ | ✔ |  | ✔ |
Language/platform | Python | R | R/Web | R | R | R/Python/Perl | Python | R | R |