Table 1 Comparison of high and medium quality MAGs from whole community shotgun metagenome to the mini-metagenomes from the Bacteroidetes (CF319a) and Vis6 (subset of Bacteroidetes) enrichments by HCR-FISH&FACS
From: A pipeline for targeted metagenomics of environmental bacteria
| Â | Whole community | Bacteroidetes (CF319a sorts) | Vis6 (Vis6-814&871 sorts) |
|---|---|---|---|
MDA | No | Yes | Yes |
Replicates | 1 | 10 | 10 |
Sequenced reads (per replicate) | 115 M | 15 M | 12 M |
Number of MAGs (total) | 15 | 1 | 7 |
Number of Vis6-MAGs included | 1 | 0 | 7 |
16S rRNA in Vis6 MAG | No | No | Yes |