Skip to main content

Table 4 Phylogenetic divergence in host and water microbiomes

From: Community recovery dynamics in yellow perch microbiome after gradual and constant metallic perturbations

 TimeGroupsPermanovaMultiple test correctionBetadisperMrpp
p value
ADONIS
p values B-Hp values
dispersion
p value
MRPP
Ctrl = control regime; CC = concentration is constant; CV = concentration is variable
GutT0All groups0.052 0.0790.279
CC-Ctrl0.042 *0.0770.048*0.033 *
CC-CV0.0510.0770.1410.049 *
Ctrl-CV0.280*0.2800.3020.234
T3All groups0.001** 0.3670.647
CC-Ctrl0.001**0.002 **0.9160.001***
CC-CV0.006 **0.006 **0.1450.008 *
Ctrl-CV0.001***0.002 **0.2950.001 ***
T5All groups0.006 * 0.2170.199
CC-Ctrl0.1350.1350.9230.104
CC-CV0.005 **0.012 *0.0840.009**
Ctrl-CV0.008 **0.012 *0.1300.008 **
SkinT0All groups0.016 * 0.5400.500
CC-Ctrl0.1660.1660.6490.154
CC-CV0.0810.1220.2560.075
Ctrl-CV0.026 *0.0780.5990.020 *
T3All groups0.008 ** 0.8200.580
CC-Ctrl0.035*0.049 *0.6190.049 *
CC-CV0.049 *0.049 *0.5860.045 *
Ctrl-CV0.021*0.049 *0.8720.009 **
T5All groups0.001*** 0.3800.001 ***
CC-Ctrl0.011 *0.011 *0.7490.008 **
CC-CV0.001***0.002 **0.3070.002 **
Ctrl-CV0.001 ***0.002 **0.2360.001 **
WaterT0All groups0.001 *** 0.6560.886
CC-Ctrl0.018 *0.027 *1.0000.009 **
CC-CV0.002 **0.006 **0.2910.002 **
Ctrl-CV0.036 *0.036 *0.5190.038 *
T3All groups0.001 *** 0.036 *0.596
CC-Ctrl0.002 **0.002**0.0680.002 **
CC-CV0.001 **0.002 **0.020 *0.001 ***
Ctrl-CV0.001 ***0.002 **0.5460.001 ***
TR1All groups0.001 *** 0.2140.108
CC-Ctrl0.001 ***0.002 **0.3050.002 **
CC-CV0.001 ***0.002 **0.0640.001 ***
Ctrl-CV0.007 **0.007 **0.6530.007 **
TR2All groups0.001 *** 0.6390.381
CC-Ctrl0.003 **0.005 **0.3950.003 **
CC-CV0.0960.0960.8920.077
Ctrl-CV0.001 ***0.003 **0.3910.001 ***
TR3All groups0.001 *** 0.5610.629
CC-Ctrl0.001 ***0.003 **0.3430.001 ***
CC-CV0.003 **0.005 **0.5360.002 **
Ctrl-CV0.007 **0.007 **0.6200.006 **
TR4All groups0.001 *** 0.4980.031 *
CC-Ctrl0.009 **0.009 **0.5360.007 **
CC-CV0.006 **0.009 **0.1790.009 **
Ctrl-CV0.004 **0.009 **0.5780.002 **
T5All groups0.001 *** 0.4080.027 *
CC-Ctrl0.002 **0.002 **0.3310.001 **
CC-CV0.001 ***0.002 **0.5780.003 **
Ctrl-CV0.002 **0.002 **0.4380.001 **
  1. The phylogenetic distances between OTUs were computed using Gunifrac distance (see “Methods” section). The divergence between treatments and control was assessed using PERMANOVA and the homogeneity for group dispersions (distance from centroid) was evaluated using two multivariate tests, BETADISPER and multi-response permutation procedure (MRRP) of within versus among group dissimilarities. The significance of divergence between groups was measured by applying multiple correction tests with Benjamini-Hochberg BH (p value < 0.05)
  2. p value < = 0.001 : “***”, p value < = 0.01 : “**”, p value < = 0.05 : “*”