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Table 2 Genome map position and strength of the association for most significant SNP in each of the 39 phenotypes

From: A gene co-association network regulating gut microbial communities in a Duroc pig population

Phenotype SNP Chr Bp Candidate gene Distance to gene (Bp) Effect P value
Anaerovibrio rs320095924 8 3,650,253 SORCS2 0 − 0.364 8.89E−09
Blautia rs331690240 23 14,234,646 ENSSSCG00000050465 0 0.475 2.14E−21
Bulleidia rs340048252 11 69,840,940 NALCN 0 1.086 5.29E−17
Butyricicoccus rs81361511 2 96,004,482 ENSSSCG00000041042 71,388 − 0.882 2.43E−15
Campylobacter rs81472036 18 15,768,346 EXOC4 0 − 0.708 6.09E−07
Catenibacterium rs81323962 3 74,840,151 ETAA1 103,387 − 0.567 8.52E−08
Clostridium rs81251808 4 60,750,431 HNF4G 113,341 − 0.325 3.72E−09
Collinsella rs81430153 11 18,229,756 PHF11 0 0.771 4.32E−07
Coprococcus rs81344777 3 4,420,359 RBAK 2425 − 0.223 1.26E−07
Desulfovibrio rs331690240 23 14,234,646 ENSSSCG00000050465 0 1.052 3.81E−14
Dorea rs81248474 6 8,320,740 ENSSSCG00000042592 0 − 0.199 1.34E−09
Faecalibacterium rs81288412 13 121,545,470 ENSSSCG00000050978 3524 0.237 1.07E−17
Fibrobacter rs343652685 1 174,156,779 ENSSSCG00000047027 156,250 1.092 3.99E−09
Gemmiger rs80980706 17 58,651,427 VAPB 6509 0.269 1.37E−08
Lachnospira rs329723588 15 137,647,629 SCLY 0 − 0.545 1.84E−08
Lactobacillus rs81235044 4 121,603,127 ENSSSCG00000046641 100,786 − 0.743 2.77E−09
Megasphaera rs81371842 3 65,644,946 ENSSSCG00000042171 273,629 − 1.085 1.23E−08
Mitsuokella rs81358080 2 41,479,089 ENSSSCG00000047282 5730 − 1.094 3.68E−08
Oscillospira rs81344398 6 34,452,081 ENSSSCG00000042964 722 − 0.223 4.09E−10
Parabacteroides rs81242782 5 71,843,440 LRRK2 0 − 0.763 2.83E−06
Peptococcus rs81253718 2 43,124,329 ENSSSCG00000045584 48,027 − 0.907 1.44E−09
Phascolarctobacterium rs344728746 15 6,453,282 ENSSSCG00000042287 110,243 − 0.289 2.32E−09
Prevotella rs329143797 8 75,777,330 TRIM2 0 0.178 1.56E−06
RFN20 rs81345563 2 44,851,717 ENSSSCG00000033786 38,407 − 0.571 7.63E−12
Roseburia rs81222575 8 19,050,584 ENSSSCG00000041382 5304 − 0.375 1.11E−08
Ruminococcus rs339681838 14 35,548,936 FBXW8 0 0.133 1.26E−07
Sphaerochaeta rs81222575 8 19,050,584 ENSSSCG00000041382 5304 0.776 3.58E−08
Streptococcus rs80787622 11 24,468,975 TNFSF11 0 1.503 2.43E−12
Succinivibrio rs345030123 6 267,415 FANCA 0 0.967 3.82E−09
Sutterella rs322099448 8 74,295,221 RBM46 16,663 0.826 4.34E−12
Treponema rs340048252 11 69,840,940 NALCN 0 − 0.850 2.80E−10
AlphaBACT rs331027938 7 118,897,310 ENSSSCG00000044157 12,891 0.141 1.10E−07
Entamoeba rs81323991 12 12,377,085 ENSSSCG00000043117 7568 1.175 1.71E−08
Hypotrichomonas rs334181413 18 4,567,215 ENSSSCG00000016426 0 − 1.404 9.73E−09
Trichomitus rs81382396 4 10,874,687 ENSSSCG00000047619 0 1.257 5.98E−07
Tetratrichomonas rs81280147 9 99,713,062 CD36 0 − 0.960 1.57E−08
Neobalantidium rs81323206 6 81,951,114 IFNLR1 37,030 − 1.948 7.05E−09
Blastocystis rs320737267 17 46,864,439 TTPAL 10,153 1.030 2.81E−12
AlphaPROTO rs80782515 17 28,489,220 RALGAPA2 0 0.373 9.83E−11