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Table 2 Genome map position and strength of the association for most significant SNP in each of the 39 phenotypes

From: A gene co-association network regulating gut microbial communities in a Duroc pig population

Phenotype

SNP

Chr

Bp

Candidate gene

Distance to gene (Bp)

Effect

P value

Anaerovibrio

rs320095924

8

3,650,253

SORCS2

0

− 0.364

8.89E−09

Blautia

rs331690240

23

14,234,646

ENSSSCG00000050465

0

0.475

2.14E−21

Bulleidia

rs340048252

11

69,840,940

NALCN

0

1.086

5.29E−17

Butyricicoccus

rs81361511

2

96,004,482

ENSSSCG00000041042

71,388

− 0.882

2.43E−15

Campylobacter

rs81472036

18

15,768,346

EXOC4

0

− 0.708

6.09E−07

Catenibacterium

rs81323962

3

74,840,151

ETAA1

103,387

− 0.567

8.52E−08

Clostridium

rs81251808

4

60,750,431

HNF4G

113,341

− 0.325

3.72E−09

Collinsella

rs81430153

11

18,229,756

PHF11

0

0.771

4.32E−07

Coprococcus

rs81344777

3

4,420,359

RBAK

2425

− 0.223

1.26E−07

Desulfovibrio

rs331690240

23

14,234,646

ENSSSCG00000050465

0

1.052

3.81E−14

Dorea

rs81248474

6

8,320,740

ENSSSCG00000042592

0

− 0.199

1.34E−09

Faecalibacterium

rs81288412

13

121,545,470

ENSSSCG00000050978

3524

0.237

1.07E−17

Fibrobacter

rs343652685

1

174,156,779

ENSSSCG00000047027

156,250

1.092

3.99E−09

Gemmiger

rs80980706

17

58,651,427

VAPB

6509

0.269

1.37E−08

Lachnospira

rs329723588

15

137,647,629

SCLY

0

− 0.545

1.84E−08

Lactobacillus

rs81235044

4

121,603,127

ENSSSCG00000046641

100,786

− 0.743

2.77E−09

Megasphaera

rs81371842

3

65,644,946

ENSSSCG00000042171

273,629

− 1.085

1.23E−08

Mitsuokella

rs81358080

2

41,479,089

ENSSSCG00000047282

5730

− 1.094

3.68E−08

Oscillospira

rs81344398

6

34,452,081

ENSSSCG00000042964

722

− 0.223

4.09E−10

Parabacteroides

rs81242782

5

71,843,440

LRRK2

0

− 0.763

2.83E−06

Peptococcus

rs81253718

2

43,124,329

ENSSSCG00000045584

48,027

− 0.907

1.44E−09

Phascolarctobacterium

rs344728746

15

6,453,282

ENSSSCG00000042287

110,243

− 0.289

2.32E−09

Prevotella

rs329143797

8

75,777,330

TRIM2

0

0.178

1.56E−06

RFN20

rs81345563

2

44,851,717

ENSSSCG00000033786

38,407

− 0.571

7.63E−12

Roseburia

rs81222575

8

19,050,584

ENSSSCG00000041382

5304

− 0.375

1.11E−08

Ruminococcus

rs339681838

14

35,548,936

FBXW8

0

0.133

1.26E−07

Sphaerochaeta

rs81222575

8

19,050,584

ENSSSCG00000041382

5304

0.776

3.58E−08

Streptococcus

rs80787622

11

24,468,975

TNFSF11

0

1.503

2.43E−12

Succinivibrio

rs345030123

6

267,415

FANCA

0

0.967

3.82E−09

Sutterella

rs322099448

8

74,295,221

RBM46

16,663

0.826

4.34E−12

Treponema

rs340048252

11

69,840,940

NALCN

0

− 0.850

2.80E−10

AlphaBACT

rs331027938

7

118,897,310

ENSSSCG00000044157

12,891

0.141

1.10E−07

Entamoeba

rs81323991

12

12,377,085

ENSSSCG00000043117

7568

1.175

1.71E−08

Hypotrichomonas

rs334181413

18

4,567,215

ENSSSCG00000016426

0

− 1.404

9.73E−09

Trichomitus

rs81382396

4

10,874,687

ENSSSCG00000047619

0

1.257

5.98E−07

Tetratrichomonas

rs81280147

9

99,713,062

CD36

0

− 0.960

1.57E−08

Neobalantidium

rs81323206

6

81,951,114

IFNLR1

37,030

− 1.948

7.05E−09

Blastocystis

rs320737267

17

46,864,439

TTPAL

10,153

1.030

2.81E−12

AlphaPROTO

rs80782515

17

28,489,220

RALGAPA2

0

0.373

9.83E−11