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Table 1 Number of significant SNP (N) and false discovery rate (FDR, %) at three nominal P value thresholds and across the 39 phenotypes

From: A gene co-association network regulating gut microbial communities in a Duroc pig population

Phenotype P value < 0.05 P value < 0.01 P value < 0.001
N FDR, % N FDR, % N FDR, %
Anaerovibrio 3836 53.13 355 11.90 105 4.04
Blautia 3803 53.64 232 18.26 88 4.82
Bulleidia 4114 49.18 196 21.63 77 5.51
Butyricicoccus 3830 53.22 255 16.60 92 4.61
Campylobacter 4088 49.53 271 15.62 69 6.15
Catenibacterium 4407 45.56 164 25.87 25 17.01
Clostridium 4024 50.40 211 20.09 67 6.34
Collinsella 3969 51.17 290 14.59 73 5.82
Coprococcus 4152 48.68 269 15.73 68 6.24
Desulfovibrio 3797 53.73 203 20.88 70 6.07
Dorea 4170 48.45 226 18.75 63 6.74
Faecalibacterium 3644 56.21 750 5.58 387 1.08
Fibrobacter 4032 50.29 225 18.83 66 6.43
Gemmiger 4077 49.68 238 17.80 43 9.88
Lachnospira 4192 48.17 248 17.07 64 6.64
Lactobacillus 3966 51.21 291 14.54 103 4.12
Megasphaera 4027 50.36 234 18.10 69 6.15
Mitsuokella 4201 48.06 211 20.09 58 7.32
Oscillospira 4161 48.57 198 21.41 68 6.24
Parabacteroides 4206 47.99 211 20.09 45 9.44
Peptococcus 4254 47.39 319 13.25 95 4.47
Phascolarctobacterium 3921 51.86 278 15.22 129 3.28
Prevotella 3952 51.41 267 15.85 66 6.43
RFN20 3946 51.50 299 14.14 101 4.20
Roseburia 4025 50.39 264 16.03 59 7.20
Ruminococcus 4015 50.53 265 15.97 97 4.37
Sphaerochaeta 4143 48.80 213 19.90 68 6.24
Streptococcus 4060 49.91 260 16.28 73 5.82
Succinivibrio 4071 49.76 314 13.46 99 4.28
Sutterella 4016 50.51 248 17.07 81 5.24
Treponema 3966 51.21 307 13.77 102 4.16
AlphaBACT 3960 51.30 314 13.46 89 4.77
Entamoeba 3849 52.92 335 12.61 117 3.62
Hypotrichomonas 3897 52.21 230 18.42 67 6.34
Trichomitus 3944 51.52 307 13.77 126 3.36
Tetratrichomonas 3998 50.76 266 15.91 64 6.64
Neobalantidium 3828 53.24 297 14.24 139 3.05
Blastocystis 3859 52.77 320 13.21 78 5.44
AlphaPROTO 4195 48.13 259 16.34 67 6.34