Table 3 Overview and identification source of 31 novel sProteins
From: Discovery of novel community-relevant small proteins in a simplified human intestinal microbiome
Abbreviation | Species | Prediction source | Size [aa] | Trypsin | Asp-N | ||
|---|---|---|---|---|---|---|---|
Peptides | PSMs | Peptides | PSMs | ||||
AC1 | A. caccae | Prodigal | 47 | 1 | 5 | 2 | 11 |
AC2 | A. caccae | Prodigal | 49 | 1 | 5 | 0 | 0 |
AC3 | A. caccae | Prodigal | 57 | 3 | 25 | 0 | 0 |
BL1 | B. longum | In silico | 57 | 1 | 5 | 0 | 0 |
BP1 | B. producta | Prodigal | 39 | 4 | 12 | 2 | 8 |
BP2 | B. producta | Prodigal | 45 | 1 | 5 | 0 | 0 |
BP3 | B. producta | Prodigal | 45 | 1 | 19 | 0 | 0 |
BP4 | B. producta | Prodigal | 46 | 3 | 12 | 2 | 20 |
BP5 | B. producta | Prodigal | 48 | 1 | 11 | 0 | 0 |
BP6 | B. producta | Prodigal | 49 | 4 | 25 | 0 | 0 |
BP7 | B. producta | Prodigal | 52 | 2 | 9 | 2 | 4 |
BP8 | B. producta | Prodigal | 57 | 2 | 12 | 2 | 3 |
BP9 | B. producta | Prodigal | 58 | 3 | 23 | 0 | 0 |
BP10 | B. producta | Prodigal | 61 | 2 | 50 | 4 | 209 |
BP11 | B. producta | Prodigal | 64 | 2 | 6 | 0 | 0 |
BP12 | B. producta | Prodigal | 66 | 5 | 34 | 4 | 11 |
BP13 | B. producta | Prodigal | 70 | 6 | 547 | 5 | 405 |
BP14 | B. producta | ChemGenome | 81 | 6 | 55 | 2 | 5 |
BP15 | B. producta | ChemGenome | 87 | 0 | 0 | 1 | 4 |
BT1 | B. thetaiotaomicron | ChemGenome | 32 | 1 | 5 | 0 | 0 |
BT2 | B. thetaiotaomicron | Prodigal | 36 | 0 | 0 | 1 | 16 |
BT3 | B. thetaiotaomicron | Prodigal | 53 | 2 | 3 | 0 | 0 |
BT4 | B. thetaiotaomicron | Prodigal | 55 | 1 | 19 | 1 | 4 |
BT5 | B. thetaiotaomicron | In silico | 57 | 4 | 30 | 2 | 10 |
BT6 | B. thetaiotaomicron | Prodigal | 57 | 3 | 115 | 5 | 36 |
BT7 | B. thetaiotaomicron | Prodigal | 61 | 1 | 8 | 2 | 19 |
BT8 | B. thetaiotaomicron | Prodigal | 68 | 2 | 35 | 0 | 0 |
CR1 | C. ramosum | In silico | 20 | 1 | 4 | 0 | 0 |
CR2 | C. ramosum | In silico | 31 | 2 | 18 | 0 | 0 |
CR3 | C. ramosum | Prodigal | 44 | 0 | 0 | 1 | 3 |
CR4 | C. ramosum | Prodigal | 58 | 7 | 53 | 3 | 13 |