From: Re-purposing software for functional characterization of the microbiome
Software | Database format | % Unclassified reads | % Classified Reads | % Classified reads assigned to the root | % Classified reads assigned to correct GO term or related non-root LCF | % Classified reads assigned to an incorrect GO term |
---|---|---|---|---|---|---|
Kraken | DNA | 14.80 | 85.20 | 14.20 | 84.10 | 1.70 |
Kraken 2 | Amino Acid | 6.09 | 93.91 | 13.71 | 86.29 | 1.12 |
MEM | Amino Acid | 14.86 | 85.14 | 14.61 | 84.71 | 0.68 |