Skip to main content

Table 1 Microbial genes that are differentially abundant in dcl234 and Col-0 root microbiomes

From: Dicer-like proteins influence Arabidopsis root microbiota independent of RNA-directed DNA methylation

Protein Name Function (Uniprot) logFC (dcl234/Col-0) p value EC_ number
Beta-glucuronidase uidA Carbohydrate metabolic process 7.91 1.05E-31 3.2.1.31
Alanine dehydrogenase AlaDH Oxidation-reduction process 10.75 8.4E-105 1.4.1.1
Aminoglycoside 3′-Phosphotransferase neo Kanamycin-kinase, antibiotic activity 11.21 1.3E-150 2.7.1.95
Aminoglycoside 3′-Phosphotransferase aphA Kanamycin-kinase, antibiotic activity 9.52 3.35E-52 2.7.1.95
Ornithine carbamoyltransferase argF Arginine biosynthetic process via ornithine; citrulline biosynthetic process − 3.30 1.09E-06 2.1.3.3
2-Keto-4-carboxy-3-hexenedioate hydratase ligJ Lignin catabolic process − 3.15 2.52E-07 4.2.1.-
Glutamyl-tRNA(Gln) amidotransferase subunit A gatA Aspartyl-tRNA aminoacylation − 3.33 5.23E-07 6.3.5.7