Fig. 2

Genome-wide profiling of mRNAs highlight dcl234-altered biological processes that are important for plant-microbe interactions. The differentially expressed genes (DEGs; fold change ≥ 1.5, FDR ≤ 0.05, n = 4) that were upregulated (a) and downregulated (b) in dcl234 compared to Col-0 were subject to the gene ontology (GO) analysis. The chord diagrams show the GO terms that link to their sub-classifications. The sub-classifications are labeled with GO ID that can be queried together with their corresponding DEGs in Table S4. GO analysis were performed by Bingo analysis of Cytoscape software at p ≤ 0.01 level of significance representing the p value cut-off of over-representation equal or less than the cutoff for each GO category. See also Figure S6