Fig. 2

Comparison of differentially expressed genes across treatment groups. a Heat map showing log2 fold change of gene expression for microbiome treatments groups compared to the axenic control. b The number of shared differentially expressed genes between treatment groups. Upregulated genes are on the top right of the plot and downregulated genes are shown on the bottom left. c Euler diagrams comparing the number of differentially expressed genes in the indicated treatment conditions to all other single-microorganism treatments and the mixed community. Significantly altered gene expression was based on an adjusted p value < 0.05