Skip to main content
Fig. 2 | Microbiome

Fig. 2

From: Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale

Fig. 2

Diagram depicting Betaproteobacteria genomes and environmentally relevant capacities encoded by representatives of 98% ANI clusters. Note that no single genome harbors all of these genes, but combinations of them instead (Table S4, Additional File 6). Some genomes harbor methanol dehydrogenases that are potentially able to turn methanol directly into formate (XoxF type). Enzymes delineated with solid lines were predicted using KOFAM HMMs, and the number of genomes (> 1*) encoding those genes are shown in the bar plot. Enzymes that were predicted using methods as part of ggKbase are shown with dashed lines (long dashes) and enzymes or subunits that are presumably encoded are shown with dotted lines. For more information about metabolic potential see Methods section. *AMO was included in this diagram even though it was detected in only 1 genome, to indicate aerobic ammonia oxidation is also possibly carried out by members of this clade

Back to article page