Fig. 3.

Evolution of microbiota states and enterotyping-based clusters with time. a Percentage of rats with PCoA1-based basal state or alternative state microbiota (cf Fig. 2). b Percentage of rats with enterotyping-based cluster A, B, or C microbiota. For both panels, percentage in groups treated with 2% or 3% DSS as indicated in Fig. 1. Sampling points as indicated in Fig. 1. Total number of rats sampled is 20 for each time point, except for T27 (19 rats). T31 was omitted because of missing data (only 15 rats sampled)