Table 2 PerMANOVAs by compartment testing for the effects of soil origin (Corsica or France) and plant genotype on bacterial community composition. PerMANOVA tests are based on a Bray-Curtis dissimilarity matrix using an iterative subsampling of a depth of 1500 sequences (1000 iterations) per sample. Pseudo-F test statistics, degrees of freedom, and P values are presented, and significant tests are displayed in bold and in italics
Test | Soil origin Pseudo-Fdf | Soil origin P value | Genotype Pseudo-Fdf | Genotype P value |
|---|---|---|---|---|
Rhizosphere | F1,28 = 4.838 | 0.001 | F2,27 = 0.762 | 0.679 |
Root | F1,28 = 1.006 | 0.374 | F2,27 = 1.982 | 0.026 |
Nodule | F1,27 = 1.057 | 0.330 | F2,67 = 0.506 | 0.941 |
Leaf | F1,28 = 0.501 | 0.801 | F2,27 = 1.052 | 0.411 |