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Table 4 Differentially abundant bacteria at the OTU level per increment in AM use of (a) all antimicrobials (AMs) combined and for (b) amoxicillin, (c) amoxicillin-clavulanate and (d) phenoxymethylpenicillin, adjusted for age, gender, language and other AMs (for individual AMs)

From: Antimicrobial drug use in the first decade of life influences saliva microbiota diversity and composition

 

OTUs

baseMean

log2FC

lfcSE

padj

Nearest taxa

a

Otu000108

10.588

− 0.070

0.015

0.010

Incertae Sedis

Otu000130

4.859

− 0.095

0.021

0.026

Paludibacter

b

Otu000257

0.579

− 2.378

0.360

0.001

Rikenellaceae

c

Otu000257

0.579

− 4.852

0.678

0.001

Rikenellaceae

d

Otu000130

4.859

− 0.216

0.045

0.008

Paludibacter

  1. The log2fold changes reported are per increment unit AM
  2. baseMean mean of normalised counts of all samples, lfcSE standard error, padj adjusted p value
  3. “↓” symbolises the abundances decrease per use of AM