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Table 4 Differentially abundant bacteria at the OTU level per increment in AM use of (a) all antimicrobials (AMs) combined and for (b) amoxicillin, (c) amoxicillin-clavulanate and (d) phenoxymethylpenicillin, adjusted for age, gender, language and other AMs (for individual AMs)

From: Antimicrobial drug use in the first decade of life influences saliva microbiota diversity and composition

  OTUs baseMean log2FC lfcSE padj Nearest taxa
a Otu000108 10.588 − 0.070 ↓ 0.015 0.010 Incertae Sedis
Otu000130 4.859 − 0.095 ↓ 0.021 0.026 Paludibacter
b Otu000257 0.579 − 2.378 ↓ 0.360 0.001 Rikenellaceae
c Otu000257 0.579 − 4.852 ↓ 0.678 0.001 Rikenellaceae
d Otu000130 4.859 − 0.216 ↓ 0.045 0.008 Paludibacter
  1. The log2fold changes reported are per increment unit AM
  2. baseMean mean of normalised counts of all samples, lfcSE standard error, padj adjusted p value
  3. “↓” symbolises the abundances decrease per use of AM
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Microbiome

ISSN: 2049-2618

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