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Table 1 Metagenome-assembled genome properties

From: A genomic view of trophic and metabolic diversity in clade-specific Lamellodysidea sponge microbiomes

Host clade MAG name Total length Pct GC Num scf Gene count 16S len CheckM complete CheckM contam Taxonomy
Ia SP12AHP1 2,316,397 54.6 125 2323 1467 91.4 0.0 Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae
Ia SP12ARB1 2,913,125 57.2 262 3307 1381 69.1 0.0 Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae
Ia SP12BCY1 2,978,903 39.9 202 2868 1517 100.0 0.0 Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Ekhidna
Ia SP12CHS1 4,999,041 48.0 573 6155 1486 96.6 0.2 Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Gomontiellaceae; Hormoscilla
Ia SP5AHP2 2,126,940 54.9 153 2340 1467 87.8 0.0 Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae
Ia SP5ARB1 2,540,908 59.8 118 2682 1415 82.4 3.4 Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae
Ia SP5ARS3 2,817,712 63.5 46 2617 n.d 94.8 0.0 Alphaproteobacteria: Rhodospirillales
Ia SP5BCY1 2,936,924 39.7 200 2813 1517 96.4 0.5 Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Ekhidna
Ia SP5CHS1 4,838,078 47.7 445 5922 1484 96.6 0.2 Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Gomontiellaceae; Hormoscilla
Ia SP5CPC 2,787,143 43.8 397 3056 1442 77.4 0.0 Cyanobacteria; Synechococcales; Prochloraceae; Prochloron
Ia SP5GCR1 1,621,865 44.7 28 1518 1542 98.3 0.0 Gammaproteobacteria; Chromatiales
Ia SP5OBV1 1,589,243 29.8 57 1544 1469 91.2 0.0 Oligoflexia; Bdellovibrionales
Ib GM102ARS1 1,092,149 65.2 302 1180 263 41.2 0.8 Alphaproteobacteria: Rhodospirillales
Ib GM102HS1 5,041,890 47.5 518 6591 227 95.7 1.8 Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Gomontiellaceae; Hormoscilla
II GM202ARS1 2,820,038 63.5 18 2912 1500 100.0 0.0 Alphaproteobacteria: Rhodospirillales
II GM202ARS2 1,828,912 53.3 49 1885 1496 85.3 0.8 Alphaproteobacteria: Candidatus Methylospongiales
II GM202BCY1 3,008,284 40.3 122 2918 1517 94.9 0.5 Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Ekhidna
II GM202CHS1a 6,869,623 47.5 70 7441 1492 97.4 2.0 Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Gomontiellaceae; Hormoscilla
III GM7ARB1 2,553,113 60.7 59 2499 1463 96.6 0.0 Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae
III GM7ARB2 2,578,993 59.9 37 2551 1235 93.7 0.9 Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae
III GM7ARS4 1,589,243 52.0 24 1425 66 91.0 0.8 Alphaproteobacteria: Candidatus Methylospongiales
III GM7CHS1b 6,299,679 47.8 6 6160 1484 100.0 1.8 Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Gomontiellaceae
III GM7GCV1 1,911,341 61.0 40 1792 1524 89.1 0.0 Gammaproteobacteria; Cellvibrionales
  1. Additional metadata and genome quality information are provided in Supplementary Table 3; n.d. not detected. Symbols denote genomes previously described in [13]
  2. aMAG GUM202CHS1 is identical to NCBI accession RFFC00000000.1
  3. bMAG GM7CHS1 was newly assembled as described in the “Methods” section, replacing NCBI accession RFFB00000000.1
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Microbiome

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