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Fig. 3 | Microbiome

Fig. 3

From: VIBRANT: automated recovery, annotation and curation of microbial viruses, and evaluation of viral community function from genomic sequences

Fig. 3

Effect of source environment on predictive abilities of VIBRANT, VirFinder, VirSorter, and MARVEL. Viral scaffolds from IMG/VR and HGV database were used to test if VIBRANT displays biases associated with specific environments. a The recall (or recovery) of viral scaffolds from 12 environment groups was compared between VIBRANT and two confidence cutoffs for both VirFinder and VirSorter. Marine environments were classified into two groups: marine A (coastal, gulf, inlet, intertidal, neritic, oceanic, pelagic, and strait) and marine B (hydrothermal vent, volcanic, and oil). b Comparison of the overlap in the scaffolds identified as viruses by all three programs. Cutoffs for VirFinder (scores greater than or equal to 0.75) and VirSorter (categories 1 and 2 using virome decontamination mode) were set to display each program’s ability to recover diverse viruses

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Microbiome

ISSN: 2049-2618

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