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Fig. 2 | Microbiome

Fig. 2

From: VIBRANT: automated recovery, annotation and curation of microbial viruses, and evaluation of viral community function from genomic sequences

Fig. 2

Performance comparison of VIBRANT, VirFinder, VirSorter, and MARVEL on artificial scaffolds of 3–15 kb. Performance was evaluated using datasets of reference viruses, bacterial plasmids, and bacterial/archaeal genomes. For VirFinder and VirSorter, two different confidence cutoffs were used (VirFinder: score of at least 0.90 and score of at least 0.75, VirSorter: categories 1 and 2 predictions and categories 1 and 2 predictions using virome decontamination mode). All four programs were compared using the following statistical metrics: F1 score, MCC, recall, precision, accuracy, and specificity. To ensure equal comparison all scaffolds tested encoded at least four open reading frames

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Microbiome

ISSN: 2049-2618

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