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Table 2 Functional assemblage having the largest relative abundance for each functional category

From: Revealing the microbial assemblage structure in the human gut microbiome using latent Dirichlet allocation

Functional category

Functional assemblage

Biosynthesis of other secondary metabolites

B-assemblage(ko)

Carbohydrate metabolism

B-assemblage(ko)

Lipid metabolism

B-assemblage(ko)

Transport and catabolism

B-assemblage(ko)

Digestive system

B-assemblage(ko)

Endocrine system

B-assemblage(ko)

Glycan biosynthesis and metabolism

B-assemblage(ko)

Environmental adaptation

B-assemblage(ko)

Energy metabolism

P-assemblage(ko)

Endocrine and metabolic diseases

P-assemblage(ko)

Immune diseases

P-assemblage(ko)

Infectious diseases

P-assemblage(ko)

Metabolism of other amino acids

P-assemblage(ko)

Metabolism of terpenoids and polyketides

P-assemblage(ko)

Nervous system

P-assemblage(ko)

Excretory system

P-assemblage(ko)

Folding, sorting, and degradation

P-assemblage(ko)

Transcription

R-assemblage(ko)

Amino acid metabolism

R-assemblage(ko)

Metabolism of cofactors and vitamins

R-assemblage(ko)

Membrane transport

R-assemblage(ko)

Cell communication

R-assemblage(ko)

Signaling molecules and interaction

R-assemblage(ko)

Xenobiotics biodegradation and metabolism

R-assemblage(ko)

Immune system

C-assemblage(ko)

Nucleotide metabolism

C-assemblage(ko)

Neurodegenerative diseases

C-assemblage(ko)

Substance dependence

C-assemblage(ko)

Replication and repair

C-assemblage(ko)

Signal transduction

C-assemblage(ko)

Cell motility

C-assemblage(ko)

Cell growth and death

C-assemblage(ko)

Translation

C-assemblage(ko)

Cardiovascular diseases

C-assemblage(ko)

Cancers

C-assemblage(ko)

  1. Each functional assemblage is indicated by the name of the corresponding microbial assemblage with (ko) appended