Table 1 Strains and characteristics of the NIBSC Gut-Mix-RR and Gut-HiLo-RR. Gut-Mix-RR percentage is based on relative number of genome copies. Gut-HiLo-RR percentage is based on relative number of genome copies. GC content based on genome sequences where available or if not available (*) by the original species description. Accession numbers are GenBank Accession numbers or RefSeq accession numbers if available. NC_008530 is the RefSeq accession for the type strain Lactobacillus gasseri ATCC 33323. Sequences generated from this study for all strains are available from NCBI Bioproject ID PRJNA622674. 16S rRNA copy number and intragenomic variation is based on analysis of genome sequences through IMG/M
Species | Culture collection number | GC-content (%) | Gut-Mix-RR (%) | Gut-HiLo-RR (%) | Accession numbers | 16S copy number (number of sequence variants) |
|---|---|---|---|---|---|---|
Akkermansia muciniphila | DSM 22959 | 55.8 | 6.37 | 0.18 | NC_010655 | 3 (1) |
Alistipes finegoldii | DSM 17242 | 56.7 | 4.54 | 1.30 | NC_018011 | 2 (2) |
Anaerostipes hadrus | DSM 3319 | 37.2 | 6.11 | 1.75 | NZ_KB290627 | 1 (1) |
Bacteroides thetaiotaomicron | DSM 2079 | 42.9 | 2.69 | 7.72 | NC_004663 | 5 (3) |
Bacteroides uniformis | DSM 6597 | 46.5 | 3.66 | 1.05 | GCF_000154205 | 4 (2) |
Bifidobacterium longum subsp. infantis | DSM 20088 | 59.9 | 6.00 | 17.20 | NC_011593 | 4 (1) |
Bifidobacterium longum subsp. longum | DSM 20219 | 60.3 | 6.92 | 19.82 | GCF_900104835 | 4 (2) |
Blautia wexlerae | DSM 19850 | 41.4 | 3.77 | 0.11 | GCF_000484655 | 2 (1) |
Clostridium butyricum | DSM 10702 | 28.5 | 3.70 | 10.59 | GCF_000409755 | 1 (1) |
Collinsella aerofaciens | DSM 13712 | 60.0* | 6.95 | 1.99 | GCF_902501475 | 7 (3) |
Escherichia coli | DSM 1103 | 50.4 | 3.26 | 9.33 | CP009072 | 7 (5) |
Eubacterium hallii | DSM 3353 | 38.2 | 5.16 | 1.48 | GCF_000173975 | 1 (1) |
Faecalibacterium prausnitzii | DSM 17677 | 56.4 | 5.49 | 0.16 | NZ_CP048437 | 3 (3) |
Lactobacillus gasseri | DSM 20077 | 33.0 | 8.97 | 0.26 | NC_008530 | 6 (6) |
Parabacteroides distasonis | DSM 20701 | 45.1 | 3.52 | 10.10 | NC_009615 | 7 (3) |
Prevotella copri | DSM 18205 | 44.9 | 4.83 | 13.84 | GCF_000157935 | 7 (6) |
Prevotella melaninogenica | DSM 7089 | 41.0 | 5.34 | 1.53 | NC_014370.1 and NC_014371.1 | 4 (2) |
Roseburia hominis | DSM 16839 | 48.5 | 4.72 | 1.35 | NC_015977 | 4 (2) |
Roseburia intestinalis | DSM 14610 | 42.6 | 3.88 | 0.11 | NZ_LR027880 | 6 (5) |
Ruminococcus gauvreauii | DSM 19829 | 47.6 | 4.13 | 0.12 | GCF_000425525 | 4 (3) |