Fig. 6
From: The microbiome as a biosensor: functional profiles elucidate hidden stress in hosts
Expressed functions associated with irrigation treatment. a Dot plot of Log2(fold-change) SEED subsystems enriched or depleted in TWW irrigated root metatranscriptomes. Significantly (FDR p < 0.05, represented by more than two gene families) enriched or depleted transcript abundance was computed using the goseq software package, with corrections for read abundance. Symbols are proportional to the sub-system relative abundance and colored based on the enrichment or depletion log10 (p value). Circles indicate TWW-enriched categories and triangles indicate TWW-depleted categories. b Differential metagenome enrichment (TWW/FW fold change) compared to differential metatranscriptome expression level. Highlighted (colored) categories significantly enriched or depleted in the metatranscriptome analysis. “ns” = “not significant.” Symbols are proportional to the log10(p value) enrichment in the metatranscriptome analysis. Numbers label the enriched category, as marked in a. c KEGG pathway-level enrichment or depletion in TWW-irrigation root metatranscriptomes (p value < 0.05), based on keggProfiler enrichment analysis. Significantly enriched or depleted gene clusters in TWW-irrigated roots are highlighted and colored in pink