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Fig. 4 | Microbiome

Fig. 4

From: The microbiome as a biosensor: functional profiles elucidate hidden stress in hosts

Fig. 4

Analyses of SEED subsystems and KEGG pathways significantly enriched or depleted in metagenome of TWW-irrigated roots. a Dot plot of log2(fold-change) relative abundance of enriched or depleted SEED subsystem. Significantly (FDR p < 0.05, represented by more than two gene families) enriched or depleted gene abundance was computed using the goseq software package, with correction for read counts. Symbols are proportional to the sub-system relative abundance and colored based on the enrichment/depletion log10(p value). Circles indicate TWW-enrichment while triangles indicated TWW-depleted categories. b Heatmap of TWW-enriched or depleted (p value < 0.05) KEGG pathways (characterized by keggProfiler). Genes of interest, significantly enriched or depleted in TWW-irrigated root metagenomes, are highlighted and colored in pink c.

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