Skip to main content

Table 3 Taxonomy associated to sequences of glycoside hydrolases belonging to GH13 family (most abundant) and the enriched GH families in heavy fraction samples from SIP metagenome

From: Cultivation-independent and cultivation-dependent metagenomes reveal genetic and enzymatic potential of microbial community involved in the degradation of a complex microbial polymer

GH familiesSampleProteobacteriaAcidobacteriaActinobacteriaPlanctomycetesOthers
GH13Cultivated66.8 (2605)21.8 (827)0.9 (36)0.09 (1)10.4 (51.4)
GH13_SIPControl20.1 (128)23.4 (148)25.6 (162)0.1 (4)31 (196)
EPS17.9 (89)24.7 (125)20.4 (95)2.9 (13)34 (172)
Labeled17.2 (127)4 (30)45.7 (333)5.7 (42)27 (201)
GH109Control11 (22)45 (92)12 (26)2 (4)31 (68)
EPS7 (19)26 (76)7 (18)21 (60.8)40 (111.6)
Labeled7 (34)9 (48)13 (62)29 (150)42 (217)
GH117Control0 (0)33 (1)33 (1)0 (0)33 (1)
EPS0 (0)0 (0)17 (1)0 (0)38 (5)
Labeled9 (1)0 (0)27 (3)0 (0)64 (7)
GH50Control100 (3)0 (0)0 (0)0 (0)0 (0)
EPS100 (2)0 (0)0 (0)0 (0)0 (0)
Labeled8 (2)0 (0)0 (0)0 (0)92 (24)
GH32Control0 (0)44 (4)11 (1)0 (0)44 (4)
EPS0 (0)11 (2)5 (1)5 (1)79 (15)
Labeled6 (2)14 (5)3 (1)9 (3)69 (24)
GH17Control75 (9)0 (0)0 (0)0 (0)25 (3)
EPS43 (3)0 (0)0 (0)0 (0)57 (4)
Labeled44 (8)0 (0)0 (0)0 (0)56 (10)
GH71Control0 (0)0 (0)100 (1)0 (0)0 (0)
EPS0 (0)25 (1)50 (2)0 (0)25 (1)
Labeled22 (5)0 (0)35 (8)0 (0)43 (10)
  1. Average percentage from 4 replicates (total number of sequences)