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Fig. 7 | Microbiome

Fig. 7

From: Cultivation-independent and cultivation-dependent metagenomes reveal genetic and enzymatic potential of microbial community involved in the degradation of a complex microbial polymer

Fig. 7

Workflow diagram of the experimental design. a13C-Glucose and 12C-Glucose was used in PSYL5 culture medium for 13C- and 12C-WH15EPS production by Granulicella sp WH15. 13C- and 12C-WH15EPS were purified and incubated with litter-topsoil samples collected in Wolfheze forest, NL. Controls without WH15EPS were also incubated; each treatment had 6 replicates. After 35 days of incubation and CO2 respiration measurements, DNA was extracted and fractionated. “Heavy fraction” of the 13C-WH15EPS incubations and total DNA from 12C-WH15EPS and controls without EPS were sent for shotgun sequencing. b In parallel, purified 12C-WH15EPS was used as a carbon source for culture medium DNMS. A 10−3 dilution of litter-topsoil samples collected in Wolfheze forest was inoculated in the culture medium and incubated at room temperature for 30 days. Each plate had 2 replicates. Next, cells were scraped from the plates; total DNA was extracted and sent for Shotgun sequencing

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