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Table 1 Abundance of candidate ORFs for functional selection

From: Discovery of a novel integron-borne aminoglycoside resistance gene present in clinical pathogens by screening environmental bacterial communities

 garORF 1ORF 2ORF 3
Predicted functional domainP-loop NTPaseNonepartial S41-like peptidaseDUF1851
Length [bp]504816867438
Abundance in selection setscefotaxime04161825
chloramphenicol81200
ciprofloxacin7500
colistin01000
ertapenem81014
gentamicin1692102
imipenem26101
meropenem017011
rifampicin0502
sulfamethoxazole0200
trimethoprim16100
  1. ORFs recovered from the set of unique reads were clustered with 97% identity threshold in each selection set. The size of clusters was reported as the abundance of candidate ORFs