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Table 1 Abundance of candidate ORFs for functional selection

From: Discovery of a novel integron-borne aminoglycoside resistance gene present in clinical pathogens by screening environmental bacterial communities

  gar ORF 1 ORF 2 ORF 3
Predicted functional domain P-loop NTPase None partial S41-like peptidase DUF1851
Length [bp] 504 816 867 438
Abundance in selection sets cefotaxime 0 416 18 25
chloramphenicol 8 12 0 0
ciprofloxacin 7 5 0 0
colistin 0 10 0 0
ertapenem 8 1 0 14
gentamicin 1692 1 0 2
imipenem 26 1 0 1
meropenem 0 17 0 11
rifampicin 0 5 0 2
sulfamethoxazole 0 2 0 0
trimethoprim 16 1 0 0
  1. ORFs recovered from the set of unique reads were clustered with 97% identity threshold in each selection set. The size of clusters was reported as the abundance of candidate ORFs